#!/bin/sh -e

pkg=artfastqgenerator
if [ "$ADTTMP" = "" ] ; then
  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
fi
cd $ADTTMP
cp -a /usr/share/doc/artfastqgenerator/examples/* .
find . -name "*.gz" -exec gunzip \{\} \;
$pkg -R miniReference.fasta -O C1 -S ">1" -E ">" -URQS true -SE true -F1 test1.fastq -F2 test2.fastq
if [ -e C1.1.fastq -a -e C1.2.fastq ] ; then
    echo "Test seems to be OK"
fi
