#!/bin/bash
set -e

pkg="lighter"
CUR_DIR=`pwd`

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cp -a ${CUR_DIR}/debian-tests-data/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP
gunzip -r *

echo "Test functionality"
lighter -r sequence.fasta -k 17 5000000 0.1 -t 10
[ -s sequence.cor.fa ] || exit 1
echo "======================================="
echo "PASS"
